Does the Engine Analyzer or Engine Analyzer Pro consider Port Size (volume) when estimating Performance?
Yes, the EA Pro (and even the standard EA v3.0) will show the effects of large ports at high and low RPM. Both programs ask for port volume (or average port diameter) for both the head and the intake manifold runner. Most other programs don’t ask for these details, but they are required for reasonably accurate predictions. You will definitely see low RPM performance suffer when ports get too big.