Why doesn this [terminal or window-system setup] code work in my .emacs file, but it works just fine after Emacs starts up?
During startup, Emacs initializes itself according to a given code/file order. If some of the code executed in your .emacs file needs to be postponed until the initial terminal or window-system setup code has been executed but is not, then you will experience this problem (this code/file execution order is not enforced after startup).
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