Which tables and columns in the schema contain the data found in the Population Diversity section of the refSNP Cluster Report?
The three values below, found in the refSNP Population Diversity section, are from tables in the SNP annotation area of the schema pdf: Hardy-Weinberg Probability is located in the SNPHWProb table. Average estimated heterozygosity is located in the SNP table. Average Allele Frequency is located in the SNPAlleleFreq table. Assay sample size (number of chromosomes), Population data sample size (number of chromosomes), Total number of populations with frequency data, and Total number of individuals with genotype data are all located in the refSNP page Population Diversity section, and are all computed on the fly.
Related Questions
- The "Source" column in the Population Diversity section of the refSNP cluster report contains the abbreviations IG, AF, and GF. What do these abbreviations stand for?
- How is HWP (Hardy Weinberg Probability) found in the Population Diversity section of the refSNP report determined, and how does it relate to genotype data?
- How do I download the data located in the Population Diversity section of the refSNP report for all human SNPs? Would I get it on your FTP site?
