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Where can I find the order of sample assignment to the demultiplexed bins?

April 26, 2017assignment bins demultiplexed sample

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Where can I find the order of sample assignment to the demultiplexed bins?

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The file SamplesDirectories.csv contains the sample information from the sample sheet, and has an additional column (Directory) that specifies the numbered demultiplexed output directory for each sample. This file is located in the Demultiplexed/ directory.

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The key to finding the location of demultiplexed data is looking at the Demultiplex_Stats.htm file in the BaseCalls_Stats directory. The Directory column will indicate the project/sample output directory. The FASTQ files within the directory contain the index and lane as part of the name.