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When I run gen_trans it loads and reads all the chromosome files but it doesn write anything in the refFlat.txt.fa file. Whats wrong?

April 26, 2017CHROMOSOME file files loads READS run write wrong

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When I run gen_trans it loads and reads all the chromosome files but it doesn write anything in the refFlat.txt.fa file. Whats wrong?

1 Answer

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You need to run the command in the directory of the chromosome sequences, or you will have to put the full path of the chromosome files in chrlist.txt.