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What score thresholds should be used in selecting no calls for individual genotypes?

April 26, 2017genotypes individual score selecting thresholds Used

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What score thresholds should be used in selecting no calls for individual genotypes?

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It is recommended these genotypes be discarded: probability < 0.9 (Chiamo); score > 0.5 (BRLMM); score < 0.15 (GenCall). Exclusion lists (indicating poorly performing assays and samples) and filtered data (with such data removed) are also available.