What sample prep do I use for MiSeq?
Parallel to the launch of the MiSeq, Illumina will offer the TruSeq Custom Amplicon Kit. This kit supports the generation of up to 384 amplicons per sample with a highly multiplexed assay. TruSeq Sample Prep Kits can be used for DNA and small RNA applications. Nextera sample prep kits can be used for amplicon sequencing, small genome sequencing, and clone checking.