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What options are available for simulating a model present in BioModels Database?

April 26, 2017biomodels database model Options PRESENT simulating

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What options are available for simulating a model present in BioModels Database?

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Many models stored in the curated branch of BioModels Database have been converted to JWS Online format and can be simulated with this mathematica-based simulation system. See the list of available models. Models are exported into several different formats, that can be used with various simulators. Some of the formats are specific for particular software tools, such as XPP-Aut or SciLab. Other formats, such as SBML and CellMLare common standard formats and can be used with multiple compliant software tools. Once a model has been selected for simulation, it can be downloaded using the relevant link, and saved locally in the format selected. The model can then be simulated using your simulation tool of choice. Below are screenshots of model BIOMD0000000005 simulated using JWS Online, SciLab, XPP-aut, COPASI and CellDesigner, the latter two being the latest software to import SBML.