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What is the minimal set of files needed to run alignments (GERALD.pl)?

April 26, 2017alignments files needed run

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What is the minimal set of files needed to run alignments (GERALD.pl)?

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config.xml (produced by RTA or OLB) config.txt (user-defined parameters) s_*_*_qseq.txt (base calls) BustardSummary.xml + the Plots/ folder • What is the minimal set of files needed to run CASAVA post-alignment analysis (run.pl) config.xml (produced by GERALD) Fasta-formatted reference genome files (these must be the same files that were the source of the squashed references used for alignment) s_*_*_export.txt (alignments) Summary.xml, Summary.htm For RNA analysis: refFlat.txt.gz or seq_gene.md.gz files (Exon annotations) •