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What is the maximum amount of amplicons I can sequence on a MiSeq?

April 26, 2017amplicons maximum miseq sequence

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What is the maximum amount of amplicons I can sequence on a MiSeq?

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This depends on the amplicon size, number of samples, desired coverage, read length (which will determine output of run), and the assay used. If you are using the TruSeq Custom Amplicon Kit, 96 samples can be pooled in a single run combining up to 384 amplicons per sample.