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What is in the alignment diagram in TC Report??

April 26, 2017alignment diagram report TC

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What is in the alignment diagram in TC Report??

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The alignment diagram in TC Report shows the layout of the component sequences relative to the consensus sequence (TC) and to each other. EST sequences are shown in black arrows and ET sequences are shown in red arrows. Please see question 9 for explanation on the directionality of the arrows. The numbers associated with the arrows correspond to entries in the component sequence table located below the alignment diagram. EST sequences that are from the 5′, 3′ end of the same cDNA clone (clone mates) share the same number while denoted with letter a or b. THe clone mates are also shown in the Opposite Ends table in the TC Report. Please see question 10 for explanations for the red, green tags.