Important Notice: Our web hosting provider recently started charging us for additional visits, which was unexpected. In response, we're seeking donations. Depending on the situation, we may explore different monetization options for our Community and Expert Contributors. It's crucial to provide more returns for their expertise and offer more Expert Validated Answers or AI Validated Answers. Learn more about our hosting issue here.

What files are available from the UniProtKB-GOA project ?

April 26, 2017files project uniprotkb-goa

0

Posted

What files are available from the UniProtKB-GOA project ?

1 Answer

0

Posted

All UniProtKB-GOA annotations (electronic and manual) can be downloaded from our ftp site in a simple 15 column tab-delimited format: ftp://ftp.ebi.ac.uk/pub/databases/GO/GOA/ The UniProtKB-GOA project offers users a number of different files so people can choose whether to look at the entire collection of GO annotations to proteins in UniProtKB: ftp://ftp.ebi.ac.uk/pub/databases/GO/GOA/UNIPROT/gene_association.go_uniprot.gz Or, if you were only interested in proteins from a particular species, we also provide non-redundant, species-specific files for human, mouse, rat, zebrafish, chicken, cow and arabidopsis proteins (these files are created using the International Protein Index (IPI) – which provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms). Using these species-specific files has the added advantage that they are supplied along with a file of cross-references which can be used to map between a number of different sequence ide