What file formats are supported for dockable ligands in Glide?
If you are running Glide from Maestro, you can choose to dock the Workspace ligand, ligands from the Project Table, or ligands from an external file. Maestro can read structures from a wide variety of file formats into the Project Table — see the Maestro User Manual for details. When docking ligands from external files, whether from Maestro or from the command line, you can choose a single multi-structure Maestro file, a multi-structure SD file, a multi-structure MOL2 file, or a single-structure PDB file.