What does thoroughness mean?
When you send a docking job either using Docking/Interactive or Docking/Run Docking Batch you are asked to enter a thoroughness value. This value represents the length of the docking simulation. The default value is 1. and this works well with nearly every kind of docking scenario, however in certain circumstances such as if you have a very large pocket this value should be increased slightly to a range of between 5. and 10.