Important Notice: Our web hosting provider recently started charging us for additional visits, which was unexpected. In response, we're seeking donations. Depending on the situation, we may explore different monetization options for our Community and Expert Contributors. It's crucial to provide more returns for their expertise and offer more Expert Validated Answers or AI Validated Answers. Learn more about our hosting issue here.

What does the future hold for running applications within Bioperl?

April 26, 2017applications bioperl future hold running

0

Posted

What does the future hold for running applications within Bioperl?

2 Answers

0

Posted

We are trying to build a standard starting point for analysis application which will probably look like Bio::Tools::Run::AnalysisFactory which will allow the user to request which type of remote or local server they want to use to run their analyses. This will connect to the Pasteur’s PISE server, the EBI’s Novella server, as well as be aware of wrappers to run applications locally. Additionally we suggest investigating the BioPipe project, also known as bioperl-pipeline, at www.biopipe.org. This is a sophisticated system to chain together sets of analyses and build rules for performing these computes.

0

Posted

We are trying to build a standard starting point for analysis application which will probably look like Bio::Tools::Run::AnalysisFactory which will allow the user to request which type of remote or local server they want to use to run their analyses. This will connect to the Pasteur’s PISE server, the EBI’s Novella server, as well as be aware of wrappers to run applications locally. Additionally we suggest investigating the BioPipe project, also known as bioperl-pipeline, at http://www.biopipe.org. This is a sophisticated system to chain together sets of analyses and build rules for performing these computes.