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What do those colorful bars for C. briggsae alignments mean?

April 26, 2017alignments bars briggsae colorful mean

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What do those colorful bars for C. briggsae alignments mean?

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Dark blue bars are regions of strong similarity. Light blue bars are regions of weak similarity. Dashed areas don’t match. When there are multiple bars in the same region, it means that there are several C. briggsae clones that all match the region.