What do the different SNP IDs in the result files mean?
Back to the FAQ In detail.txt, PRI3.txt and failed.txt files: “ID-alleles” shows the SNPs genotyped by natural PCR-RFLP such as “rs1438551-A_C”; “rs ID-alleles~enzyme recognized sequences” shows the SNPs genotyped by mismatch PCR-RFLP, such as ” rs517415-C_T~GAATTC”. rflp.txt file: “rs ID” shows the SNPs genotyped by natural PCR-RFLP, such as “rs1438551”. “rs ID|mis” shows the SNPs genotyped by mismatch PCR-RFLP, such as ” rs517415|mis”. Why are some data files formatted in tabular-delimited format? Back to the FAQ Tab-delimited text format files can be easily imported and managed in a spreadsheet or a database. What should be done when the assay design failed for one or more SNPs? Back to the FAQ Three major causes of failure and the corresponding solutions: • Sequence around the SNP is not suitable for any design. Solution: There is no way to use PCR-RFLP to genotype this SNP. Other methods may have to be used. However, this kind of SNP is rare. • SNPSequer does not provide enough fl
