What commands can be put into a PBS script?
In general, a PBS script contains commands to specify options to PBS that pertain to the job, file manipulations that are required as a part of the job, and execution of one or more programs that constitute the job. For example, the following script names the job “test123”, requests 30 minutes of “wall time”, requests one processor in one node for processing, and specifies that stderr and stdout be redirected to the files test123.err and test123.out, respectively. These PBS options are followed by three command lines to be executed by a shell when the job is run on a compute node. We strongly recommend using the temporary space available in each compute node while running the jobs. Running jobs this way not only results in faster execution, but also reduces the network traffic and increases the cluster performance. On each single-core and dual-core node there is 58 GB of temporary space. On each quad-core node there is 128 GB of temporary space. To use it, copy the files required for y
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