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What BLAST databases are available on ICE?

April 26, 2017blast databases Ice

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What BLAST databases are available on ICE?

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The BLAST databases in the /genome directory are accessible both from marin and from the ICE cluster. To see a list of nucleotide BLAST databases, use the command ‘ls /genome/*.nsq /genome/*/*.nsq’ (This lists databases in /genome and immediate subdirectories of /genome). To see protein BLAST databases, use .psq in place of .nsq in the ls command.