What are the methods that I have to insert in the datahandler table?
The methods in the datahandler table are used to get the input for the runnable and store the output of the runnable. If the input object is in a database, we will be instantiating a new dbadaptor and use its method to retrieve the data from the database. The data will be the input to the runnable. The output of the runnable(an object) has to be stored in the database. Hence the methods that do this has to be specified. Example: +—————-+————–+—————————+——+ | datahandler_id | iohandler_id | method | rank | +—————-+————–+—————————+——+ | 1 | 1 | get_Contig_by_internal_id | 1 | | 2 | 1 | perl_primary_seq | 2 | | 3 | 2 | get_ScoreAdaptor | 1 | | 4 | 2 | store_by_PID | 2 | +—————-+————–+—————————+——+ The method get_Contig_by_internal_id gets the contig from the database from its internal id. Then the perl_primary_seq is called upon the contig to obtain a Seq object from
