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Should I use the sequence file or the frequency/check point file to perform the secondary structure prediction?

April 26, 2017file Frequency perform point prediction Secondary sequence structure

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Should I use the sequence file or the frequency/check point file to perform the secondary structure prediction?

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We recommend that the profiling information be used as input to prospect_ssp whenever possible — it summarizes the evolutionary knowledge about that protein, and it contains the sequence information as well, since that is the basis the profile was generated in the first place.