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Ive loaded some sequences. Can I run CLUSTALw or MUSCLE to generate an alignment?

April 26, 2017alignment clustalw loaded muscle run sequences

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Ive loaded some sequences. Can I run CLUSTALw or MUSCLE to generate an alignment?

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Yes – support for CLUSTALx and MUSCLE is integrated into Genome Workbench. You can fid these in the Tools menu at Tools -> Alignments -> CLUSTALw and Tools -> Alignments -> MUSCLE. Genome Workbench will need to be able to find the binary to execute each of these programs. If you have installed the applications with CLUSTALw and MUSCLE available in your runtime PATH, then Genome Workbench will work out of the box. If Genome Workbench cannot locate the applications, it will ask you for their locations.