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Is SAM-T02 suitable for prediction of transmembrane domains?

April 26, 2017domains prediction sam-t02 suitable transmembrane

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Is SAM-T02 suitable for prediction of transmembrane domains?

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SAM-T99 and SAM-T02 have not been optimized for transmembrane predictions. They are “ok” on transmembrane predictions, but not nearly as good as tools optimized for that task. We’ve been told that the TMHMM server is currently the best predictor for transmembrane helices, but we’ve not done any tests ourselves.