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Is MPI-HMMERs output different from HMMERs output?

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Is MPI-HMMERs output different from HMMERs output?

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The output should be largely identical with the only exception being searches that result in multiple identical e-values. Because the searches are being performed in parallel, it’s possible that the results are returned in an unpredictable order. In this case, these results could be reordered.

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