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Is CONTRAlign appropriate for my sequences?

April 26, 2017appropriate contralign sequences

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Is CONTRAlign appropriate for my sequences?

1 Answer

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CONTRAlign should do as well as any other aligner in most pairwise alignment situations. CONTRAlign is based on a global alignment model, so if you think your sequence may have a local alignment, try using the “double-affine gap scoring” option with CONTRAlign. Return to top.