I’m an image processing expert. Why should I use CellProfiler for development?
You can take advantage of the existing base of modules for the mundane parts of image processing and focus on developing your own algorithms or complex sequences of modules. When you have developed a solution, you can contribute the code to the open-source CellProfiler project, which saves you from writing your own GUI, compiling for multiple platformsd, and answering basic questions from the public (like installation troubleshooting and basic usage). Your method will be widely available and in a format that biologists can actually use. CellProfiler is written in Matlab, which is commonly used in image processing, especially for prototyping. Note that many CellProfiler modules are simple wrappers for Matlab functions – the identification and illumination correction modules are where some of the more interesting algorithms reside. Concerned about speed? Matlab allows functions to be written in other languages, compiled, and called from the program. Within CellProfiler, check out Help >
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