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I am trying to run torsion angle dynamics and I get an error when it tries to generate the torsion angle topology. It suggests that I need to change some parameters, what do these parameters mean?

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I am trying to run torsion angle dynamics and I get an error when it tries to generate the torsion angle topology. It suggests that I need to change some parameters, what do these parameters mean?

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A. The covalent topology of the system must be converted into something suitable for performing torsion angle dynamics calculations. It is at this stage that problems may occur.

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