How to identify a subset of the most confident de novo CNV calls?
The 2009Aug27 vesion of PennCNV added a script for validating de novo CNVs and assigning P-values to de novo calls. If you want to know whether a particularly interesting de novo CNV is real or not, or if you want to select a set of most confident de novo CNVs for experimental validation, then this program should definitely be used. Check it out here.