How should I make my 3-D atom model project?
The models you are describing are of course projection of how something incredibly tiny might look. They may not look or work the way we think at all. This is the root meaning of uncertainty. Imagining the geometry of the infinitesimal requires we open our imagination to certain paradoxes. We have based our model of the atom on the model of the solar system, but one of the central principles of chaos theory is that if we try to trace a conceptual pattern through various scales we often enter into long sequences of what looks like disorder before we again arrive at what looks like order. So in scalular cosmology I would wager that one level’s paradigm does not look like the next level’s paradigm. Hope this helps.