How do I set up a web-hosted BioTapestry viewer like the one for the sea urchin endomesoderm model?
The same Java JAR file that is used for the Editor can also run the Viewer; it just uses a different entry point. However, it is preferable to use a minimal stripped down JAR file to run the viewer. Also, you need to bundle up your data file in a JAR, and have your web server host the appropriate JNLP file. A ZIP archive that contains all the necessary pieces, as well as a HOWTO guide, is available on the BioTapestry web site; see here for more information.