How do I set a maxtree limit for each random addition sequence replicate?
If you are doing a number of random addition sequence replicates you’ll need a way to get around the problem of hitting the maxtree limit on the first replicate and hence aborting the search before PAUP gets to remaining replicates. For example, if you want to apply a maxtree limit of 100 to each of 10 random addition sequence replicates then you will need to set the maxtree limit to 1000 and use two options under the the hsearch command.
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- How do I set a maxtree limit for each random addition sequence replicate?
