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How do I run Blast from within Bioperl?

bioperl blast run
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How do I run Blast from within Bioperl?

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Use the module Bio::Tools::Run::StandAloneBlast. It will give you access to many of the search tools in the NCBI blast suite including blastll, bl2seq, blastpgp. The basic structure is like this.

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Use the module Bio::Tools::Run::StandAloneBlast. It will give you access to many of the search tools in the NCBI blast suite including blastall, bl2seq, blastpgp. The basic structure is like this.

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