How do I download the data located in the Population Diversity section of the refSNP report for all human SNPs? Would I get it on your FTP site?
You can get the data from the following three database table dump files located in the dbSNP FTP Site: SNP.bcp.gz (the relevant fields are: snp_id is the rs#, avg_heterozygosity) SNPAlleleFreq.bcp.gz SNPGtyFreq.bcp.gz Also located in the ftp directory are the Allele.bcp.gz and the UniGty.bcp.gz tables, where you can find the meaning of each allele_id and/or unigty_id. The column descriptions for all the tables can be found in the dbSNP Data Dictionary.
Related Questions
- Minor Allele Frequency (MAF) found in the population diversity section of the refSNP report is very high in SNPs from different sets of samples from the same ethnicity. Why?
- The "Source" column in the Population Diversity section of the refSNP cluster report contains the abbreviations IG, AF, and GF. What do these abbreviations stand for?
- Which tables and columns in the schema contain the data found in the Population Diversity section of the refSNP Cluster Report?
