How can I specify, that a functional group in a reaction is an amine but not amide?
There are various ways to define that, let’s see them by an acylation reaction example: • Write the reaction scheme in recursive SMARTS. [H:4][N;X3;!$(NC=O):3].O=[C:1][Cl:2]>>O=[C:1][#7:3].[Cl:2][H:4] • Define the reaction scheme with an R-group?and set its occurence to 0. aminenotamide_rgroup.mrv • Refine the functional group definition in the Reactivity field using the match function of Chemical Terms. aminenotamide_reactivity.
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