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How can I produce an all-against-all protein structure similarity matrix?

April 26, 2017matrix protein similarity structure

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How can I produce an all-against-all protein structure similarity matrix?

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Source: [1] [2] • I believe that you can download DALI lite and run it on your own machine with whatever PDB files you want (also has an all-against-all option). • Another program is MUSTANG, which can be run on linux and Mac OS X.