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How can I export trees in TNT format then convert them to Newick format in an automated way, with a Python script?

April 26, 2017Automated convert export format newick Python Script TNT trees

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How can I export trees in TNT format then convert them to Newick format in an automated way, with a Python script?

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Use this Python script below. It will convert all TNT-format trees (which it identifies by the files having “.tnttree” as the suffix; change this, or your filenames, if your files have a different suffix) to Newick format, producing a “.tnttree.newick” file for each on.