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How can I download the PDB in relational database format?

April 26, 2017database download format pdb Relational

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How can I download the PDB in relational database format?

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One possibility is to download all desired entries in mmCIF format from the PDB FTP site and then use • OpenMMS (see also this modified version which allows batch operation) or • Dbloader to create relational database tables. Supported DBMSs include MySQL and Oracle. Update: OpenMMS is no longer supported by the RCSB. You may however find some useful information in the OpenMMS mailing list archives. There is now a Biojava Hibernate Project which uses the Hibernate object-relational mapping framework to store Biojava structure objects in relational databases.