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You can download a file that lists best blastp match to human, fly, yeast, C. briggsae, SwissProt, and TrEMBL proteins for every C. elegans protein form the wormbase ftp site: ftp://ftp.sanger.ac.uk/pub/wormbase/current_release The file name is best_blastp_hits.WSXXX.gz where XXX is the release number.
