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How are the alignments constructed?

alignments constructed
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How are the alignments constructed?

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Alignments are performed with the programs ClustalW: Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673-4680. The default parameters are used.

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