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Hey, I want to run clustalw within Bioperl, I used Bio::Tools::Run::Alignment::Clustalw before – where did it go?

April 26, 2017alignment Bio bioperl clustalw run tools Used

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Hey, I want to run clustalw within Bioperl, I used Bio::Tools::Run::Alignment::Clustalw before – where did it go?

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The Bio::Tools::Run directory was moved to a new package, bioperl-run, to help make the size of the core code smaller and separate out the more specialized nature of application running from the rest of Bioperl. You can get these modules by installing the bioperl-run package. This is either available from CVS under the same name or available in the http://bioperl.org/DIST directory and on CPAN. This changeover began in the bioperl 1.1 developer release.