Have Illumina’s gene probes been mapped to any public database?
Yes. Probes (human and mouse) have been mapped to Ensembl. The Illumina probe track can be turned on by checking the box next to “Illumina Probes” on the “DAS Sources” drop-down menu in Contigview. When the page refreshes you will have blue features indicating the location of probes. Clicking on a probe will open up a floating menu with probe information and a link to a page giving more information about the probe. The GFF text files giving the mapping information for probes to mouse and human can be downloaded from the Sanger Institute website: – Human GFF file (use right-click, save as) – Mouse GFF file (use right-click, save as) More information about the GFF data format with an explanation of the fields can be found at: http://www.sanger.ac.
Yes. Our probes (human and mouse) have been mapped to Ensembl. The Illumina probe track can be turned on by checking the box next to Illumina Probes on the DAS Sources dropdown menu in Contigview. When the page refreshes, blue features indicate the location of probes. Clicking on a probe opens up a floating menu with probe information and a link to a page giving more information about the probe. The GFF text files giving the mapping information for probes to mouse and human can be downloaded from the Sanger Institute website ( http://www.sanger.ac.uk/Software/ formats/GFF/): – Human GFF file (right-click and select Save As) – Mouse GFF file (right-click and select Save As) More information about the GFF data format with an explanation of the fields can be found at: http://www.sanger.ac.uk/Software/formats/GFF/ • How are counts normalized in the RNA Sequencing Module See the GenomeStudio RNA Sequencing Module User Guide, the RNA Counting Methodology Technical Note, and the SNP Counting
