Does Roche NimbleGen generate reports listing the most significant binding/modification events for my ChIP-chip experiment?
Yes, we are including two promoter reports that map the peaks from your ChIP-chip data relative to the transcription start site of a gene. For instance, if a peak is called within the promoter region of a gene, the report lists the approximate location of the peak as a negative position (upstream of the start site) or positive position (downstream). Also listed are accession number of the gene, gene ID, chromosome position, among others. These reports narrow the genomic regions to look at when moving forward to validate your ChIP-chip data (e.g. gel mobility shift assay).
