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Can ZOOM output the structural variation according to the output of paired-end mapping?

April 26, 2017Mapping output paired-end structural variation zoom

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Can ZOOM output the structural variation according to the output of paired-end mapping?

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Answer. Not yet. In version 1.3, ZOOM outputs read pairs mapped in the distance range. You can judge whether there is stuctural variation by the mapping offsets and direction of the two mates of one pair. ZOOM offers the “process unmapped reads” function, which will map those unmapped reads with a different distance range or map them in single-end mode. This might help you to identify structural variation.