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Can I search MALDI-TOFTOF data where there is a different sample on each spot without combining the results?

April 26, 2017combining Data different results sample search spot

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Can I search MALDI-TOFTOF data where there is a different sample on each spot without combining the results?

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Yes. On the 4700 create the peak list using ‘Peaks to Mascot’ using the ‘Protein-Peptide Spotset’ option. This will create one file of MS/MS spectra for all spots. Search the data in Batch-Tag, then in Search Display tick the ‘Multi Sample’ option and it will separate the results by spot.