Can I mix QSYS and IFS files in a single package?
No. Management Central uses save/restore function, therefore is bound by the restrictions it imposes regarding mixing different file systems. You can create a package containing QSYS files and another one containing IFS files, then send each package to an endpoint system, but you cannot combine them into a single package. A workaround would be to place your IFS objects into a save file, then include the save file with your QSYS objects. You would then have to manually restore the save file to IFS or use a post command.
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