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Can I get the conservation scores (GERP scores) for nucleotides in whole genome alignments?

April 26, 2017alignments conservation genome nucleotides scores

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Can I get the conservation scores (GERP scores) for nucleotides in whole genome alignments?

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Yes, obtain the conservation scores, described here, by downloading the emf files for the 12 species or 31 species alignments from our ftp site. Alternatively, use the Compara Perl API to obtain the scores. An example script is provided here.