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Can GSEA analyze a gene set that contains genes that are not in my expression dataset?

April 26, 2017analyze dataset expression gene genes gsea

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Can GSEA analyze a gene set that contains genes that are not in my expression dataset?

1 Answer

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10 Posted

The gene set enrichment analysis automatically restricts the gene sets to the genes in the expression dataset. The analysis report lists the gene sets and the number of genes that were included and excluded from the analysis.